It was the one on the wiki page. Ka Ming ________________________________________ From: Peter Cock [p.j.a.c...@googlemail.com] Sent: July 29, 2011 2:42 AM To: Ka Ming Nip Cc: Edward Kirton; email@example.com Subject: Re: [galaxy-dev] "Job output not returned from cluster"
On Fri, Jul 29, 2011 at 1:01 AM, Ka Ming Nip <km...@bcgsc.ca> wrote: > My jobs have this problem when the command for the tool is wrapped by the > stderr wrapper script. > > Ka Ming Which stderr wrapper script? I think there is more than one... I've also had this error message (I'm currently working out how to connect our Galaxy to our cluster), and in at least one case it was caused by a file permission problem - the tool appeared to run but could not write the output files. If Galaxy could give more diagnostics rather than just "Job output not returned from cluster" it would help. For instance, as we use SGE, perhaps the captured stdout/stderr files might be available. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/