Thank you, Vipin.
Your information is very helpful.

Regards,
Bo

On Sat, Jul 30, 2011 at 2:13 PM, Vipin TS <vipin...@gmail.com> wrote:
>
>> Dear all,
>>
>> I want to build a Galaxy tool to run R script.
>> Do you know if there is already such tool or similar function?
>> If you can share with me, I would very appreciate your help.
>>
>
> Hi Bo Liu,
> In my Galaxy instance I added few tools running with R. Here I just wrote a
> bash wrapper script to run the R program.
> Something like this:
> a) tool.xml file
>  <command>
>     /home/foo/tools/deseq/src/deseq.sh $anno_input.select_anno_format
> $anno_out $deseq_out $bam_alignments1 $bam_alignments2
>     >> $Log_File
> </command>
> b) deseq.sh file
> ## calling R script
> cat ../src/difftest_deseq.R | /usr/bin/R --slave --args $tmpfile
> ${DESEQ_RES}
> Hope this will solve your issue !
> --Vipin
>
>>
>> Thank you,
>> Bo Liu
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>

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