You can also directly link the R script in the galaxy-tool.
We have many of those. For testing (NOT SAFE!) we also have a tool that allows 
the upload of an R script for testing purposes....
See the arhives for more extensive discussion...
<command> 
       R --slave --vanilla --file=$GALAXY_ROOT_DIR/tools/somedir/somescript.R 
--args $input1 $options $output1
 </command> 

http://gmod.827538.n3.nabble.com/Re-galaxy-user-plugging-R-into-galaxy-td1878734.html#a1889899

Good luck!

Alex


________________________________________
Van: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] 
namens liu bo [liub...@gmail.com]
Verzonden: zaterdag 30 juli 2011 6:49
Aan: galaxy-dev@lists.bx.psu.edu
Onderwerp: [galaxy-dev] Does Galaxy have a tool to run R script?

Dear all,

I want to build a Galaxy tool to run R script.
Do you know if there is already such tool or similar function?
If you can share with me, I would very appreciate your help.

Thank you,
Bo Liu
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