I think with the current state of Galaxy this would need to be fixed.  You 
would need to hard code the number of processors in the xml wrapper and in the 
corresponding job runner for that tool

From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu] 
on behalf of Chorny, Ilya [icho...@illumina.com]
Sent: Tuesday, September 13, 2011 7:58 PM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] Passing the number of mpi processors to SGE from xml file

Any thoughts on how to pass the number of processor I want to use from my xml 
wrapper to the job template. I am trying to wrap pBWA and use mpi.



Ilya Chorny Ph.D.
Bioinformatics Scientist I
Illumina, Inc.
9885 Towne Centre Drive
San Diego, CA 92121
Work: 858.202.4582
Email: icho...@illumina.com<mailto:icho...@illumina.com>
Website: www.illumina.com<http://www.illumina.com>

Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to