Did you try what Dan suggested ? Which issues did you find by doing so ?

PD: Someone should put the "repy to:" munging in this mailing list so that it 
keeps the responses in the list automatically, there's a mailman setting for 
this (reply_goes_to_list):

http://www.gnu.org/s/mailman/mailman-admin/node11.html

Ignore the "considered harmful" nonsense, in my experience it does help a lot 
in mailing lists such as this.

16 sep 2011 kl. 10:11 skrev Fengyuan Hu:

> Hi,
> 
> I don't mean to be pushy, but just in case my question is buried and 
> forgotten to be viewed. Could someone have a look at this, please?
> 
> Thanks
> Fengyuan
> 
> On 12/09/11 10:20, Fengyuan Hu wrote:
>> Dear Galaxy developers,
>> 
>> I'm trying to create a tool to export galaxy interval data to InterMine 
>> instances.
>> 
>> Firstly, based on the tool to send dataset to EpiGRAPH, I created one to 
>> FlyMine, it's working on my local instance. Then I tried a bit complex one, 
>> to integrate multiple mines in one tool, source xml as following:
>> 
>> <?xml version="1.0"?>
>> <tool name="Perform advanced genomic region search" id="intermine_export">
>> <description> with an InterMine instance</description>
>> <redirect_url_params>GENOME=${input1.dbkey} NAME=${input1.name} 
>> INFO=${input1.info}</redirect_url_params>
>> <inputs>
>> <param format="bed" name="input1" type="data" label="Send this dataset to an 
>> InterMine instance">
>> <validator type="unspecified_build" />
>> </param>
>> <conditional name="destination">
>> <param name="indexDestination" type="select" label="Select InterMine 
>> instance" help="InterMine genomic region search service.">
>> <option value="flymine">FlyMine</option>
>> <option value="modmine">modMine</option>
>> <option value="metabolicmine">MetabolicMine</option>
>> </param>
>> <when value="flymine">
>> <param name="REDIRECT_URL" type="hidden" 
>> value="http://www.flymine.org/query/genomicRegionSearch.do"; />
>> </when>
>> <when value="modmine">
>> <param name="REDIRECT_URL" type="hidden" 
>> value="http://intermine.modencode.org/query/genomicRegionSearch.do"; />
>> </when>
>> <when value="metabolicmine">
>> <param name="REDIRECT_URL" type="hidden" 
>> value="http://www.metabolicmine.org/beta/query/genomicRegionSearch.do"; />
>> </when>
>> </conditional>
>> <param name="DATA_URL" type="baseurl" value="/datasets" />
>> <param name="GALAXY_URL" type="baseurl" 
>> value="/tool_runner?tool_id=intermine_import" />
>> </inputs>
>> <outputs/>
>> <help>
>>        some help text here...
>> </help>
>> </tool>
>> 
>> I use <conditional> tag on intermine instances, it will be parsed to a 
>> dropdown list in html page, every time I select a different mine, I'd like 
>> the value of "REDIRECT_URL" param to change accordingly, but this is not 
>> working. After testing and reading the doc a bit, I realised that 
>> "REDIRECT_URL" will be renamed "destination | REDIRECT_URL" in the rendered 
>> html, and the xml parser will only recognise the key word "REDIRECT_URL" 
>> (reserved), is this the case?
>> 
>> Can I still valid my logics in the xml?
>> 
>> Thanks
>> Fengyuan
>> 
> 
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