On Fri, Sep 16, 2011 at 4:44 PM, David Matthews
<d.a.matth...@bristol.ac.uk> wrote:
> Hi,
> We are getting ready to run a local setup of Galaxy here at bristol
> university on our HPC cluster, BlueCrystal. We have got a mini test setup
> running fine and now we want to install it properly on the main cluster and
> have the galaxy instance run in the queue along with all the other HOC jobs
> that are submitted to BlueCrystal from around the university.
> The guy doing the install has just sent me this message:
> When I add the following line:
> database_connection = postgres://galaxy:@web1.acrc.bris.ac.uk/galaxy
> to
> universe_wsgi.ini
> Galaxy fails to start with the following error message:
> snip ----------------------
> galaxy.model.migrate.check DEBUG 2011-09-16 15:00:47,385 psycopg2 egg
> successfully loaded for postgres dialect
> Traceback (most recent call last):
>  File
> "/gpfs/cluster/isys/galaxy/Galaxy/galaxy-dist/lib/galaxy/web/buildapp.py",
> line 82, in app_factory
>    app = UniverseApplication( global_conf = global_conf, **kwargs )
>  File "/gpfs/cluster/isys/galaxy/Galaxy/galaxy-dist/lib/galaxy/app.py", line
> 33, in __init__
>    create_or_verify_database( db_url, kwargs.get( 'global_conf', {} ).get(
> '__file__', None ), self.config.database_engine_options )
>  File
> "/gpfs/cluster/isys/galaxy/Galaxy/galaxy-dist/lib/galaxy/model/migrate/check.py",
> line 105, in create_or_verify_database
>    % ( db_schema.version, migrate_repository.versions.latest, config_arg ) )
> Exception: Your database has version '76' but this code expects version
> '81'.  Please backup your database and then migrate the schema by running
> 'sh manage_db.sh upgrade'.
> postgres on the web server is 8.4 so it should be fine. It looks like python
> is reporting the wrong version number.

That isn't reporting the postgres version number, but the Galaxy schema number.

> Any help from the developers would be much appreciated.

The error message tells you what to do,

sh manage_db.sh upgrade

> Do you know what the problem is he is seeing? Would he be better off
> emailing you directly?

This is normal when you update the Galaxy code - every so often
the Galaxy team make changes to the database tables, e.g. to add
new columns to record user disk quotas.


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to