Brad Langhorst wrote: > On 10/19/11 3:09 AM, "Amit Anand" <a...@tll.org.sg> wrote: > > > Hi, > > > > I have just installed a local instance of galaxy. Though I am not too > > familiar > > with unix, I preferred a local instance because of large amount of data I > > have > > to process. However, I am unable to upload a file more that 2 GB in size, > > the > > error log is pased below > > > Hi anand: > It¹s not possible to upoad such big files. > You need to use FTP or local file import methods to do that. > > See: > http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files > ?highlight=%28import%29 > > > Brad > > > >
You probably also need to set: debug = False use_interactive = False In universe_wsgi.ini > > > > 127.0.0.1 - - [19/Oct/2011:15:06:08 +0800] "POST /tool_runner/index > > HTTP/1.1" > > 500 - "http://127.0.0.1:8080/tool_runner?tool_id=upload1"; "Mozilla/5.0 > > (Macintosh; Intel Mac OS X 10.7; rv:6.0.2) Gecko/20100101 Firefox/6.0.2" > > Debug at: http://127.0.0.1:8080/_debug/view/1319007854 > > ---------------------------------------- > > > > Exception happened during processing of request from ('127.0.0.1', 61099) > > Traceback (most recent call last): > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserv > > er.py", line 1053, in process_request_in_thread > > self.finish_request(request, client_address) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/SocketServer. > > py", line 322, in finish_request > > self.RequestHandlerClass(request, client_address, self) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/SocketServer. > > py", line 617, in __init__ > > self.handle() > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserv > > er.py", line 432, in handle > > BaseHTTPRequestHandler.handle(self) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/BaseHTTPServe > > r.py", line 329, in handle > > self.handle_one_request() > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserv > > er.py", line 427, in handle_one_request > > self.wsgi_execute() > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserv > > er.py", line 287, in wsgi_execute > > self.wsgi_start_response) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/urlmap.p > > y", line 202, in __call__ > > return app(environ, start_response) > > File > > "/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/middleware/xfo > > rwardedhost.py", line 21, in __call__ > > return self.app( environ, start_response ) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.6.egg/paste/ > > deploy/config.py", line 164, in __call__ > > app_iter = self.application(environ, start_response) > > File > > "/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/middleware/tra > > nslogger.py", line 68, in __call__ > > return self.application(environ, replacement_start_response) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/e > > valexception/middleware.py", line 226, in __call__ > > return self.respond(environ, start_response) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/WebError-0.8a-py2.6.egg/weberror/e > > valexception/middleware.py", line 399, in respond > > if self.xmlhttp_key in req.params: > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init > > __.py", line 900, in params > > params = self.str_params > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init > > __.py", line 892, in str_params > > return NestedMultiDict(self.str_GET, self.str_POST) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/WebOb-0.8.5-py2.6.egg/webob/__init > > __.py", line 818, in str_POST > > keep_blank_values=True) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", > > line > > 508, in __init__ > > self.read_multi(environ, keep_blank_values, strict_parsing) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", > > line > > 632, in read_multi > > environ, keep_blank_values, strict_parsing) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", > > line > > 510, in __init__ > > self.read_single() > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", > > line > > 647, in read_single > > self.read_lines() > > File > > "/Users/amit/galaxy-python/galaxy-dist/lib/galaxy/web/framework/base.py", > > line > > 253, in read_lines > > self.read_lines_to_outerboundary() > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/cgi.py", > > line > > 697, in read_lines_to_outerboundary > > line = self.fp.readline(1<<16) > > File > > "/Users/amit/galaxy-python/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpserv > > er.py", line 467, in readline > > data = self.file.readline(self.length - self._consumed) > > File > > "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/socket.py", > > line 409, in readline > > bline = buf.readline(size) > > OverflowError: long int too large to convert to int > > > > Please help me to fix this, the python version is 2.6.6. Thank you. > > > > Sincerely, > > > > Amit, > > > > Germline biology group > > Temasek Life Sciences Laboratory > > Singapore > > -- > Brad Langhorst > Postdoctoral Fellow > New England Biolabs > langho...@neb.com > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
