I am in the process of trying to develop a set of Galaxy wrappers for the tools
in my bedtools suite. I have read the Toolshed wiki, but I am still struggling
with some very basic questions that I hope you can help me with.
1. How should a tarball repository be structured for the toolshed? For
example, bedtools currently includes a Makefile plus a src/ directory and
sub-directories for each tool. The compiled objects go to obj/ and the
binaries to bin/. By reading the wiki I gather that I also need to add a new
directory that contains an XML wrapper for each tool. Is that correct? Is
there a specific name for said directory that is expected by the Toolshed?
2. Do you have an example repository that has a similar structure to what is
described in #1? This would be very helpful as a means to follow the lead of
something that already works.
I apologize if answers to these questions are made abundantly clear somewhere
yet I have somehow missed it.
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