On Fri, Dec 9, 2011 at 4:49 PM, Liisa Koski <liisa.ko...@dnalandmarks.ca> wrote:
> Hi ,
> Looks like the tool Divide FASTQ file into paired and unpaired reads is not
> recognizing my paired-end naming suffix
>
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 1:N:0:TGNCCA
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 2:N:0:TGNCCA
>
> Is there a patch for this or another tool/way I can divide this fastq file?
>
> Thanks in advance,
> Liisa

That's a new Illumina FASTQ file isn't it, where they went and changed
the read naming? That annoyed quite a few people...

Presumably you're talking about my tool of that name on the Galaxy
Tool Shed? I can take a look at this now if you agree to test it ;)

Peter
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