Thanks Peter! That would be great! Let me know when you want me to test it 
:)
Cheers,
Liisa

Liisa Koski 
Bioinformatics Programmer
Phone: 450-358-2621 x104, E-Mail: liisa.ko...@dnalandmarks.ca
Postal Address: DNA LandMarks Inc, St-jean-sur-Richelieu, J3B 6X3 Québec 
CANADA
DNA LandMarks - une compagnie de BASF Plant Science / a BASF Plant Science 
company
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From:
Peter Cock <p.j.a.c...@googlemail.com>
To:
Liisa Koski <liisa.ko...@dnalandmarks.ca>
Cc:
galaxy-dev <galaxy-...@bx.psu.edu>
Date:
2011-12-09 11:55
Subject:
Re: [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 
0.0.4) - naming suffix not recognized



On Fri, Dec 9, 2011 at 4:49 PM, Liisa Koski <liisa.ko...@dnalandmarks.ca> 
wrote:
> Hi ,
> Looks like the tool Divide FASTQ file into paired and unpaired reads is 
not
> recognizing my paired-end naming suffix
>
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 1:N:0:TGNCCA
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 2:N:0:TGNCCA
>
> Is there a patch for this or another tool/way I can divide this fastq 
file?
>
> Thanks in advance,
> Liisa

That's a new Illumina FASTQ file isn't it, where they went and changed
the read naming? That annoyed quite a few people...

Presumably you're talking about my tool of that name on the Galaxy
Tool Shed? I can take a look at this now if you agree to test it ;)

Peter

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