Thanks Peter! That would be great! Let me know when you want me to test it 

Liisa Koski 
Bioinformatics Programmer
Phone: 450-358-2621 x104, E-Mail:
Postal Address: DNA LandMarks Inc, St-jean-sur-Richelieu, J3B 6X3 Québec 
DNA LandMarks - une compagnie de BASF Plant Science / a BASF Plant Science 
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Peter Cock <>
Liisa Koski <>
galaxy-dev <>
2011-12-09 11:55
Re: [galaxy-dev] Divide FASTQ file into paired and unpaired reads (version 
0.0.4) - naming suffix not recognized

On Fri, Dec 9, 2011 at 4:49 PM, Liisa Koski <> 
> Hi ,
> Looks like the tool Divide FASTQ file into paired and unpaired reads is 
> recognizing my paired-end naming suffix
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 1:N:0:TGNCCA
> @HWI-ST916:79:D04M5ACXX:1:1101:10000:100326 2:N:0:TGNCCA
> Is there a patch for this or another tool/way I can divide this fastq 
> Thanks in advance,
> Liisa

That's a new Illumina FASTQ file isn't it, where they went and changed
the read naming? That annoyed quite a few people...

Presumably you're talking about my tool of that name on the Galaxy
Tool Shed? I can take a look at this now if you agree to test it ;)


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