On Jan 12, 2012, at 11:41 PM, Ryan Golhar wrote:

> Any ideas as to how to fix this?  We are interested in using Galaxy to host 
> all our NGS data.  If indexing on the head node is going to happen, then this 
> is going to be an extremely slow process.

Could you post the contents of /home/galaxy/galaxy-dist-9/database/pbs/62.sh ?

Although I have to admit this is really baffling.  The presence of this line 
without an error:

    galaxy.datatypes.metadata DEBUG 2012-01-11 10:22:40,162 Cleaning up 
external metadata files

Indicates that metadata was set externally and the relevant metadata files were 
present on disk.

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