> > it is also set to True: > > [galaxy@bic galaxy-dist]$ grep Ryan *.log > > runner0.log:galaxy.jobs WARNING 2012-01-10 22:17:26,381 Ryan Golhar - > self.set_metadata_externally = True > > > > Clearly something else is going on here. On my last import of BAM file, > even after samtools finished indexing the BAM files, Galaxy never > registered those jobs as completed. So this problem is still there as well. > > Thanks for checking these. So, what does your server log for runner0 look > like? > > > it is also set to True: > [galaxy@bic galaxy-dist]$ grep Ryan *.log > runner0.log:galaxy.jobs WARNING 2012-01-10 22:17:26,381 Ryan Golhar - self.set_metadata_externally = True
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