Sorry for the late response. Thanks for your help.
On Wed, Jan 4, 2012 at 2:32 PM, Carlos Borroto <carlos.borr...@gmail.com>wrote: > On Wed, Jan 4, 2012 at 2:25 PM, Ryan <ngsbioinformat...@gmail.com> wrote: > > On Wed, Jan 4, 2012 at 12:04 PM, Langhorst, Brad <langho...@neb.com> > wrote: > >> > >> Usha: > >> > >> Galaxy is essentially a wrapper around other command line tools. > >> So, while you could probably extract some of its pieces to run on the > >> command line, I don't know why you would want to. > >> > > > > I would argue it would be beneficial to invoke pipelines from the command > > line instead of being forced to use the web-based interface. command > line > > is beneficial for large #'s of datasets that need to be analyzed. > > > > Ryan > > > > I think Ryan is right and I think that's exactly the niche for the API. > > Usha you could take a look into: > http://wiki.g2.bx.psu.edu/Learn/API > > It seems there is very limited documentation, but it might help you to > see if what you want is already possible. > > Regards, > Carlos >
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