You have one or more entries in your datatypes_conf.xml file for a datatype
named "coverage" These should be eliminated from your datatypes.conf.xml file
because they are not valid datatypes (unless you have added proprietary
datatypes to your Galaxy instance with this extension). They were originally
in the datatypes.conf.xml.sample file for datatype indexers\, but datatype
indexers have been eliminated from the Galaxy framework because datatype
converters do the same thing.
Greg Von Kuster
On Feb 17, 2012, at 3:25 AM, Wetzels, Yves [JRDBE Extern] wrote:
> I am receiving the same error over and over again
> “WARNING:galaxy.datatypes.registry:Overriding conflicting datatype with
> extension 'coverage', using datatype from /mnt/galaxyData/tmp/tmpuTitVp.”
> Whether I run
> - Fastqc: Fastqc QC using FastQC from Babraham
> - FASTQ Groomer convert between various FASTQ quality formats
> Anybode any idea ?
> Kind Regards
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