Hi Daniel,
Thanks a lot I could fix the error. Now SICER is working fine.

Regards
Vidya

> Hi Vidya,
>
> It appears that the SICER shell scripts are not available on the path of
> the user that Galaxy is running under: "An error occurred running this
> job: /bin/sh: SICER-rb.sh: not found". Make sure that the scripts from the
> SICER package are available on the path and that they are configured
> properly.
>
>
> Thanks for using Galaxy,
>
> Dan
>
>
> On Mar 1, 2012, at 10:40 PM, Vidya .H.K wrote:
>
>> Hi,
>> I am trying SICER peak calling tool. I am getting the following error"
>>
>> An error occurred running this job: /bin/sh: SICER-rb.sh: not found
>> Traceback (most recent call last):
>> File "/home/root12/galaxy-dist/tools/peak_calling/sicer_wrapper.py",
>> line
>> 156, in <module>
>> if __name__=="__main__": __main__()
>> File "/home/root12/galaxy-dist/tools/peak_calling/sic "
>>
>> SICER is working fine with the sample when executed on the terminal. I
>> have installed SICER version-1.1 on ubuntu.
>>
>> Is galaxy compatible with SICER version-1.1?
>> Can anybody help me resolve this problem.
>>
>>
>> Regards
>> Vidya
>>
>>
>>
>>
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>





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