On Apr 4, 2012, at 2:44 PM, Aaron Gallagher wrote:
> On Apr 4, 2012, at 11:35 AM, Langhorst, Brad wrote:
>> This is somewhat akin to the reference area galaxy uses to store reference
>> sequences (and their various indices, formats, annotations etc).
>> It might be possible to modify galaxy's reference infrastructure to present
>> these pre-built reference packages in the same way a user chooses hg19, or
>> E. coli K12. The parse JSON option looks easier to me
> This seems like something I should look into, at least. These don't come with
> Galaxy, do they?
No, one installs those references independently.
specifically the section on reference genomes .
The more I think about this, the more i think it might make sense to explore
setting up you own loc file - might not be that tough.
I've never done that, so maybe somebody else who knows more about this will
comment on that.
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