I am trying to migrate EMBOSS tools from core galaxy code dir to shed_tools 
directory. I am getting following error with the migration script: 

sh ./scripts/migrate_tools/0002_tools.sh
Traceback (most recent call last):
  File "./scripts/migrate_tools/migrate_tools.py", line 21, in <module>
    app = MigrateToolsApplication( sys.argv[ 1 ] )
  File "/home/pavgi/galaxy-exp/lib/galaxy/tool_shed/migrate/common.py", line 
81, in __init__
    object_store=self.object_store )
  File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1836, in init
    load_egg_for_url( url )
  File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1816, in 
    dialect = guess_dialect_for_url( url )
  File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1812, in 
    return (url.split(':', 1))[0]
AttributeError: 'bool' object has no attribute 'split'

Following are tool shed related config files: 

$ cat tool_sheds_conf.xml
<?xml version="1.0"?>
    <tool_shed name="Galaxy main tool shed" 
    <tool_shed name="Galaxy test tool shed" 

$ cat shed_tool_conf.xml
<?xml version="1.0"?>
<toolbox tool_path="../shed_tools">


I am using system Python 2.6 on CentOS 6.2 system. However, I was able to 
reproduce this error on CentOS 5.8 system with custom Python 2.6 install as 
well. Any pointers on what might be wrong here will be really helpful. 


Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to