Hello Shantanu,
What is the result of typing the following in your Galaxy installation
directory?
hg heads
Als, the result of the following:
hg status
And finally, the results of the following:
hg diff
Thanks!
Greg Von Kuster
On Jun 1, 2012, at 5:12 PM, Shantanu Pavgi wrote:
>
> I am trying to migrate EMBOSS tools from core galaxy code dir to shed_tools
> directory. I am getting following error with the migration script:
>
> {{{
> sh ./scripts/migrate_tools/0002_tools.sh
> Traceback (most recent call last):
> File "./scripts/migrate_tools/migrate_tools.py", line 21, in <module>
> app = MigrateToolsApplication( sys.argv[ 1 ] )
> File "/home/pavgi/galaxy-exp/lib/galaxy/tool_shed/migrate/common.py", line
> 81, in __init__
> object_store=self.object_store )
> File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1836, in init
> load_egg_for_url( url )
> File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1816, in
> load_egg_for_url
> dialect = guess_dialect_for_url( url )
> File "/home/pavgi/galaxy-exp/lib/galaxy/model/mapping.py", line 1812, in
> guess_dialect_for_url
> return (url.split(':', 1))[0]
> AttributeError: 'bool' object has no attribute 'split'
> }}}
>
> Following are tool shed related config files:
>
> {{{
> $ cat tool_sheds_conf.xml
> <?xml version="1.0"?>
> <tool_sheds>
> <tool_shed name="Galaxy main tool shed"
> url="http://toolshed.g2.bx.psu.edu/"/>
> <tool_shed name="Galaxy test tool shed"
> url="http://testtoolshed.g2.bx.psu.edu/"/>
> </tool_sheds>
>
>
> $ cat shed_tool_conf.xml
> <?xml version="1.0"?>
> <toolbox tool_path="../shed_tools">
> </toolbox>
>
> }}}
>
> I am using system Python 2.6 on CentOS 6.2 system. However, I was able to
> reproduce this error on CentOS 5.8 system with custom Python 2.6 install as
> well. Any pointers on what might be wrong here will be really helpful.
>
> --
> Thanks,
> Shantanu
>
>
>
>
>
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