Mehmet: It's not important how the files get there, they could be moved via ftp, scp, cp, smb - whatever. Galaxy will use that directory to import from no matter how the files arrive.
I found that confusing at first too. Brad On Jun 7, 2012, at 1:55 PM, Mehmet Belgin wrote: Hi Everyone, I am helping a research group to use Galaxy on our clusters. Unfortunately I have no previous experience with Galaxy, but learning along the way. We are almost there, but cannot figure out one particular issue. This is about configuration of Galaxy, so I thought developers list is a better place to submit than the user list. The galaxy web interface allows for either copy/paste of text, or a URL. Unfortunately we cannot setup a FTP server as instructed due to restrictions on the cluster. The files we are trying to upload are large; around 2GB in size. It does not make sense to upload these files to a remote location (which we can provide an URL for) and download them back, since the data and galaxy are on the same system. However, I could not find a way to open these files locally. I did some reading, and hoped that "library_import_dir" in "universe_wsgi.ini" would do the trick, but it didn't. Therefore, I will really appreciate any suggestions. Thanks a lot in advance! -Mehmet ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ -- Brad Langhorst langho...@neb.com<mailto:langho...@neb.com> 978-380-7564
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