thanks for your reply. Unfortunately it is not feasible for us to use a script
outside Galaxy. As long as no official feature for Galaxy is released I will
work on a script which will execute workflows via the API and add this script
as a tool into Galaxy.
In case you?d be interested: we use a script that creates interlaced
data of paired end data. We run this outside galaxy on groups of
samples ordered in directories at once. We then import the interlaced
data into galaxy, enabling batch workflow. The first step of the
workflow is a deinterlacing of the datafiles.
The script is available here:
On 07/18/2012 02:38 PM, Sascha Kastens wrote:
> Hi Dev-Team,
> are you planning or maybe working on an update which enables the
> possiblilty to run workflows in batch mode with paired end data?
> Please keep all replies on the list by using "reply all"
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Geert Vandeweyer, Ph.D.
Department of Medical Genetics
University of Antwerp
Prins Boudewijnlaan 43
Tel: +32 (0)3 275 97 56
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