On Aug 8, 2012, at 2:30 PM, Karger, Amir wrote:
>> From: Nate Coraor [mailto:n...@bx.psu.edu]
>> On Aug 2, 2012, at 2:56 PM, Karger, Amir wrote:
>>> We're upgrading to a late June Galaxy from a last-year Galaxy. We noticed
>>> that the docs say you no longer need 2 different .ini files. Great!
>>> Unfortunately, the multiprocess.sh in contrib/ still assumes you have
>>> multiple .ini files.
>> multiprocess.sh is out of date, so I've removed it from galaxy-central.
>> can start and stop all of your processes now, as described at:
> Thanks. Of course, reading some other people's posts and the wiki, it looks
> like it's not *required* to merge, just recommended. Which means our existing
> system of running the different scripts on different hosts should continue to
> work. We figure we can put off the merge thing for a bit.
> Meanwhile, we're able to restart, and get happy log messages from the
> jobrunner and two web "servers" (two servers running on different ports of a
> Tomcat host). And I can do an upload, which runs locally. But when I try to
> do a blast, which is supposed to submit to the cluster (and ran just fine on
> our old install), it hangs and never starts. I would think the database is
> working OK, since it shows me new history items when I upload and stuff. The
> web Galaxy log shows that I went to the tool page, and then has a ton of
> loads to root/history_item_updates, but nothing else. The job handler Galaxy
> log has nothing since the PID messages when the server started up most
> A quick search of the archives didn't find anything obvious. (I don't have
> any obvious words to search for.) Any thoughts about where I should start
> looking to track this down?
If you aren't setting job_manager and job_handlers in your config, each server
will consider itself the manager and handler. If not configured to run jobs,
this may result in jobs failing to run. I'd suggest explicitly defining a
manager and handlers.
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