I just finished setting up a local install on our cluster but I'm having trouble uploading files.
I was able to (successfully?) upload one 160MB fasta file. But any further uploads I try, they just hang. Here's the information from the log file: paste.httpserver.ThreadPool INFO 2012-11-28 12:15:18,190 kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting) ave time N/A, max time 0.00sec, killed 0 workers galaxy.tools.actions.upload_common INFO 2012-11-28 12:20:36,597 tool upload1 created job id 4 galaxy.jobs.handler INFO 2012-11-28 12:20:38,386 (4) Job dispatched galaxy.jobs.runners.drmaa INFO 2012-11-28 12:20:38,930 (4) queued as 3718641 galaxy.objectstore CRITICAL 2012-11-28 12:21:03,071 /home/galaxy/job_working_directory/000/4 delete error [Errno 39] Directory not empty: '/home/galaxy/job_working_directory/000/4' paste.httpserver.ThreadPool INFO 2012-11-28 12:21:55,763 kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting) ave time N/A, max time 0.00sec, killed 0 workers paste.httpserver.ThreadPool INFO 2012-11-28 12:28:26,466 kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting) ave time N/A, max time 0.00sec, killed 0 workers paste.httpserver.ThreadPool INFO 2012-11-28 12:35:09,662 kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting) ave time N/A, max time 0.00sec, killed 0 workers paste.httpserver.ThreadPool INFO 2012-11-28 12:46:35,565 kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting) ave time N/A, max time 0.00sec, killed 0 workers The first upload that worked was around 12:20 (above), and the second failed one was at 12:40. The log file doesn't seem to even mention it? Could that error have killed the server somehow? Let me know if I can provide more info. Thanks, Greg ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
