Hi guys,

I wanted to make sure this made it through to the dev list.  I'm still
stuck on this :-(

Thanks,

Greg

On Wed, Nov 28, 2012 at 1:23 PM, greg <margeem...@gmail.com> wrote:
> I just finished setting up a local install on our cluster but I'm
> having trouble uploading files.
>
> I was able to (successfully?) upload one 160MB fasta file.  But any
> further uploads I try, they just hang.
>
> Here's the information from the log file:
>
> paste.httpserver.ThreadPool INFO 2012-11-28 12:15:18,190
> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
> ave time N/A, max time 0.00sec, killed 0 workers
> galaxy.tools.actions.upload_common INFO 2012-11-28 12:20:36,597 tool
> upload1 created job id 4
> galaxy.jobs.handler INFO 2012-11-28 12:20:38,386 (4) Job dispatched
> galaxy.jobs.runners.drmaa INFO 2012-11-28 12:20:38,930 (4) queued as 3718641
> galaxy.objectstore CRITICAL 2012-11-28 12:21:03,071
> /home/galaxy/job_working_directory/000/4 delete error [Errno 39]
> Directory not empty: '/home/galaxy/job_working_directory/000/4'
> paste.httpserver.ThreadPool INFO 2012-11-28 12:21:55,763
> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
> ave time N/A, max time 0.00sec, killed 0 workers
> paste.httpserver.ThreadPool INFO 2012-11-28 12:28:26,466
> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
> ave time N/A, max time 0.00sec, killed 0 workers
> paste.httpserver.ThreadPool INFO 2012-11-28 12:35:09,662
> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
> ave time N/A, max time 0.00sec, killed 0 workers
> paste.httpserver.ThreadPool INFO 2012-11-28 12:46:35,565
> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
> ave time N/A, max time 0.00sec, killed 0 workers
>
>
> The first upload that worked was around 12:20 (above), and the second
> failed one was at 12:40.  The log file doesn't seem to even mention
> it? Could that error have killed the server somehow?
>
> Let me know if I can provide more info.
>
> Thanks,
>
> Greg
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