Thanks.  That seemed to have worked.  Can you explain what happened?
(I'm curious)

-Greg

On Thu, Nov 29, 2012 at 8:43 AM, Nate Coraor <n...@bx.psu.edu> wrote:
> On Nov 28, 2012, at 1:23 PM, greg wrote:
>
>> I just finished setting up a local install on our cluster but I'm
>> having trouble uploading files.
>>
>> I was able to (successfully?) upload one 160MB fasta file.  But any
>> further uploads I try, they just hang.
>
> Hi Greg,
>
> Could you try the following:
>
> Open tools/data_source/upload.xml
>
> In the following line, set 'ajax-upload="false"':
>
> <param name="file_data" type="file" size="30" label="File" 
> ajax-upload="false" help="TIP: Due to browser limitations, uploading files 
> larger than 2GB is guaranteed to fail.  To upload large files, use the URL 
> method (below) or FTP (if enabled by the site administrator).">
>
> Then restart Galaxy and retry the upload and let us know if it succeeds.
>
> --nate
>
>>
>> Here's the information from the log file:
>>
>> paste.httpserver.ThreadPool INFO 2012-11-28 12:15:18,190
>> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
>> ave time N/A, max time 0.00sec, killed 0 workers
>> galaxy.tools.actions.upload_common INFO 2012-11-28 12:20:36,597 tool
>> upload1 created job id 4
>> galaxy.jobs.handler INFO 2012-11-28 12:20:38,386 (4) Job dispatched
>> galaxy.jobs.runners.drmaa INFO 2012-11-28 12:20:38,930 (4) queued as 3718641
>> galaxy.objectstore CRITICAL 2012-11-28 12:21:03,071
>> /home/galaxy/job_working_directory/000/4 delete error [Errno 39]
>> Directory not empty: '/home/galaxy/job_working_directory/000/4'
>> paste.httpserver.ThreadPool INFO 2012-11-28 12:21:55,763
>> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
>> ave time N/A, max time 0.00sec, killed 0 workers
>> paste.httpserver.ThreadPool INFO 2012-11-28 12:28:26,466
>> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
>> ave time N/A, max time 0.00sec, killed 0 workers
>> paste.httpserver.ThreadPool INFO 2012-11-28 12:35:09,662
>> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
>> ave time N/A, max time 0.00sec, killed 0 workers
>> paste.httpserver.ThreadPool INFO 2012-11-28 12:46:35,565
>> kill_hung_threads status: 10 threads (0 working, 10 idle, 0 starting)
>> ave time N/A, max time 0.00sec, killed 0 workers
>>
>>
>> The first upload that worked was around 12:20 (above), and the second
>> failed one was at 12:40.  The log file doesn't seem to even mention
>> it? Could that error have killed the server somehow?
>>
>> Let me know if I can provide more info.
>>
>> Thanks,
>>
>> Greg
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