Hi Greg,
Thank you for your reply. I have checked on my tool_data_table_conf.xml.sample and tool_data_table_conf.xml files and they look to be correctly formatted with <tables> tags at their beginnings and ends. However, I noticed that this file is already populated, should that be the case with a fresh newly installed Tool Shed? My issue doesn't occur when I'm importing a tool from the Tool Shed to Galaxy, but when I'm uploading a tool that I've downloaded from the Galaxy Tool Shed to my Tool Shed. The last of the errors reported after I attempt an upload being: Module galaxy.util.shed_util:336 in check_tool_input_params >> >> <http://galaxy-tools.nbi.ac.uk:9009/upload/upload?repository_id=9ed9121ed2b0078e> >> if options.tool_data_table or options.missing_tool_data_table_name: AttributeError: 'str' object has no attribute 'tool_data_table' Many Thanks, Adam. -----Original Message----- From: Greg Von Kuster [mailto:g...@bx.psu.edu] Sent: 04 December 2012 16:40 To: Adam Carr (NBI) Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Main toolshed broken?? Hi Adam, I believe this is related to the invalid xml definition in your repository's tool_data_table_conf.xml.sample file which I discussed in a previous reply. Greg Von Kuster On Dec 4, 2012, at 8:08 AM, Adam Carr (NBI) wrote: > Hi, > > I hadn't caught this as I posted my query to the list, I'm having trouble > uploading to a brand new repository. Could my issue described here: > http://dev.list.galaxyproject.org/Tool-Shed-Upload-Files-To-Repository-Crash-td4657324.html, > be related? > > Many Thanks, > Adam. > > --- > Adam Carr > Linux Support & Developmnent > E adam.c...@nbi.ac.uk<mailto:adam.c...@nbi.ac.uk> > T +44 1603 450161 > W jic.ac.uk ifr.ac.uk tgac.ac.uk tsl.ac.uk > > NBI Partnership Ltd > Norwich Research Park > Norwich NR4 7UH > > The NBI Partnership Ltd provides non-scientific services to the > Institute of Food Research, the John Innes Centre, The Genome Analysis > Centre and The Sainsbury Laboratory > > > -----Original Message----- >> >> Hi list, >> >> Trying to upload, delete, update files from a repository I own in the >> toolshed I keep getting Server Error.. >> >> This is the repo: >> http://fcaramia@.../repos/fcaramia/methylation_analysis_bismark >> >> Is anyone having the same issues?? I could just delete the repository but no >> option for that is given.. >> >> Thanks, >> >> Franco >> > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this and other > Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
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