Thank you for your reply. I have checked on my tool_data_table_conf.xml.sample
and tool_data_table_conf.xml files and they look to be correctly formatted with
<tables> tags at their beginnings and ends.
However, I noticed that this file is already populated, should that be the case
with a fresh newly installed Tool Shed?
My issue doesn't occur when I'm importing a tool from the Tool Shed to Galaxy,
but when I'm uploading a tool that I've downloaded from the Galaxy Tool Shed to
my Tool Shed.
The last of the errors reported after I attempt an upload being:
Module galaxy.util.shed_util:336 in check_tool_input_params
>> if options.tool_data_table or options.missing_tool_data_table_name:
AttributeError: 'str' object has no attribute 'tool_data_table'
From: Greg Von Kuster [mailto:g...@bx.psu.edu]
Sent: 04 December 2012 16:40
To: Adam Carr (NBI)
Subject: Re: [galaxy-dev] Main toolshed broken??
I believe this is related to the invalid xml definition in your repository's
tool_data_table_conf.xml.sample file which I discussed in a previous reply.
Greg Von Kuster
On Dec 4, 2012, at 8:08 AM, Adam Carr (NBI) wrote:
> I hadn't caught this as I posted my query to the list, I'm having trouble
> uploading to a brand new repository. Could my issue described here:
> be related?
> Many Thanks,
> Adam Carr
> Linux Support & Developmnent
> E adam.c...@nbi.ac.uk<mailto:adam.c...@nbi.ac.uk>
> T +44 1603 450161
> W jic.ac.uk ifr.ac.uk tgac.ac.uk tsl.ac.uk
> NBI Partnership Ltd
> Norwich Research Park
> Norwich NR4 7UH
> The NBI Partnership Ltd provides non-scientific services to the
> Institute of Food Research, the John Innes Centre, The Genome Analysis
> Centre and The Sainsbury Laboratory
> -----Original Message-----
>> Hi list,
>> Trying to upload, delete, update files from a repository I own in the
>> toolshed I keep getting Server Error..
>> This is the repo:
>> Is anyone having the same issues?? I could just delete the repository but no
>> option for that is given..
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this and other
> Galaxy lists, please use the interface at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at: