If you have not yet updated your Galaxy instance to the revision from the 
galaxy-dist repository in bitbucket, then that is most likely the cause of the 
behavior you are seeing.

Greg Von Kuster

On Dec 5, 2012, at 12:52 AM, Franco Caramia wrote:

> 
> 
> Hi Greg,
> 
> I have now modified the tool_dependencies.xml thank you for that..
> 
> I still have problems re-installing the tool... (need to reinstall to update 
> the tool dependency and test it correctly)
> 
> Is the reinstalling failure related to my galaxy version?? 
> 
> Here is the error:
> Server Error
>  URL: 
> http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a
> Module paste.exceptions.errormiddleware:143 in __call__
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  app_iter = self.application(environ, start_response)
> Module paste.debug.prints:98 in __call__
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  environ, self.app)
> Module paste.wsgilib:539 in intercept_output
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  app_iter = application(environ, replacement_start_response)
> Module paste.recursive:80 in __call__
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return self.application(environ, start_response)
> Module paste.httpexceptions:632 in __call__
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return self.application(environ, start_response)
> Module galaxy.web.framework.base:160 in __call__
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  body = method( trans, **kwargs )
> Module galaxy.web.framework:184 in decorator
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return func( self, trans, *args, **kwargs )
> Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return self.reselect_tool_panel_section( trans, **kwd )
> Module galaxy.web.framework:184 in decorator
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return func( self, trans, *args, **kwargs )
> Module galaxy.web.controllers.admin_toolshed:1352 in 
> reselect_tool_panel_section
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  status=status )
> Module galaxy.web.framework:746 in fill_template
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return self.fill_template_mako( filename, **kwargs )
> Module galaxy.web.framework:757 in fill_template_mako
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return template.render( **data )
> Module mako.template:296 in render
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  return runtime._render(self, self.callable_, args, data)
> Module mako.runtime:660 in _render
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  **_kwargs_for_callable(callable_, data))
> Module mako.runtime:692 in _render_context
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
> Module mako.runtime:718 in _exec_template
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  callable_(context, *args, **kwargs)
> Module _base_mako:42 in render_body
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  __M_writer(unicode(next.body()))
> Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in 
> render_body
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  __M_writer(unicode(render_tool_dependency_section( 
> >> install_tool_dependencies_check_box, [ repo_info_dict ] )))
> Module _admin_tool_shed_repository_common_mako:204 in 
> render_render_tool_dependency_section
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  changeset_revision )
> Module posixpath:67 in join
> >>   
> >> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=activate+or+reinstall&id=88ee2d7021e4dc1a#>
> >>  elif path == '' or path.endswith('/'):
> AttributeError: 'NoneType' object has no attribute 'endswith'
> 
> Thanks, 
> 
> Franco
> 
> 
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