Never mind, the INSTALLATION .log is in the repository browser...

Sorry,

Franco


On 11/12/12 4:17 PM, "Franco Caramia" <franco.cara...@petermac.org> wrote:

> Hi Greg, list
> 
> When installing a tool dependency, and the Installation Status shows : Error
> 
> In what log would the actual error be specified??
> 
> Thanks, 
> 
> Franco
> 
> On 5/12/12 9:10 PM, "Greg Von Kuster" <g...@bx.psu.edu> wrote:
> 
>> If you have not yet updated your Galaxy instance to the revision from the
>> galaxy-dist repository in bitbucket, then that is most likely the cause of
>> the behavior you are seeing.
>> 
>> Greg Von Kuster
>> 
>> On Dec 5, 2012, at 12:52 AM, Franco Caramia wrote:
>> 
>>> Re-installing error persists
>>> 
>>> 
>>> Hi Greg,
>>> 
>>> I have now modified the tool_dependencies.xml thank you for that..
>>> 
>>> I still have problems re-installing the tool... (need to reinstall to update
>>> the tool dependency and test it correctly)
>>> 
>>> Is the reinstalling failure related to my galaxy version??
>>> 
>>> Here is the error:
>>> Server Error
>>>   URL: 
>>> http://bioinf-galaxy/admin_toolshed/browse_repositories?operation=activate+o
>>> r+reinstall&id=88ee2d7021e4dc1a
>>> Module paste.exceptions.errormiddleware:143 in __call__
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter =
>>>>> self.application(environ, start_response)
>>> Module paste.debug.prints:98 in __call__
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> environ, self.app)
>>> Module paste.wsgilib:539 in intercept_output
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> app_iter = application(environ,
>>>>> replacement_start_response)
>>> Module paste.recursive:80 in __call__
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ,
>>>>> start_response)
>>> Module paste.httpexceptions:632 in __call__
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return self.application(environ,
>>>>> start_response)
>>> Module galaxy.web.framework.base:160 in __call__
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> body = method( trans, **kwargs )
>>> Module galaxy.web.framework:184 in decorator
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args,
>>>>> **kwargs )
>>> Module galaxy.web.controllers.admin_toolshed:350 in browse_repositories
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return
>>>>> self.reselect_tool_panel_section( trans, **kwd )
>>> Module galaxy.web.framework:184 in decorator
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return func( self, trans, *args,
>>>>> **kwargs )
>>> Module galaxy.web.controllers.admin_toolshed:1352 in
>>> reselect_tool_panel_section
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> status=status )
>>> Module galaxy.web.framework:746 in fill_template
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return self.fill_template_mako(
>>>>> filename, **kwargs )
>>> Module galaxy.web.framework:757 in fill_template_mako
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return template.render( **data )
>>> Module mako.template:296 in render
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> return runtime._render(self,
>>>>> self.callable_, args, data)
>>> Module mako.runtime:660 in _render
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> **_kwargs_for_callable(callable_,
>>>>> data))
>>> Module mako.runtime:692 in _render_context
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> _exec_template(inherit,
>>>>> lclcontext, args=args, kwargs=kwargs)
>>> Module mako.runtime:718 in _exec_template
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> callable_(context, *args,
>>>>> **kwargs)
>>> Module _base_mako:42 in render_body
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> __M_writer(unicode(next.body()))
>>> Module _admin_tool_shed_repository_reselect_tool_panel_section_mako:76 in
>>> render_body
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#>
>>>>> __M_writer(unicode(render_tool_dependency_section(
>>>>> install_tool_dependencies_check_box, [ repo_info_dict ] )))
>>> Module _admin_tool_shed_repository_common_mako:204 in
>>> render_render_tool_dependency_section
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> changeset_revision )
>>> Module posixpath:67 in join
>>>>> >>   
>>>>> <http://bioinf-galaxy:83/admin_toolshed/browse_repositories?operation=acti
>>>>> vate+or+reinstall&id=88ee2d7021e4dc1a#> elif path == '' or
>>>>> path.endswith('/'):
>>> AttributeError: 'NoneType' object has no attribute 'endswith'
>>> 
>>> Thanks, 
>>> 
>>> Franco
>>> 
>>> 
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>> 
>> 



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Confidentiality and legal privilege attached to this email 
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