my phthon file:
gf = open('showme.txt', 'w')
gf.write('this is a test text')
gf.close
print "info"
my xml file:
<tool name="Tool1" id="toolone">
<description>table browser proxy</description>
<command interpreter="python">
test.py
</command>
<inputs check_values="false">
<param name="one" sise="100" type="text" value="en" lavel="This is test"/>
</inputs>
<outputs><data name="showme" format="txt"/>
</outputs>
</tool>
I clicked the "!" button, it shows :
Tool: Tool1
Name: Tool1
Created: Dec 11, 2012
Filesize: 0 bytes
Dbkey: ?
Format: txt
Tool Version:
Tool Standard Output: stdout
Tool Standard Error: stderr
Tool Exit Code: 0
But I still cant found the text detail
________________________________
From: Hans-Rudolf Hotz <h...@fmi.ch>
To: Chenhao Li <windfl...@yahoo.co.uk>
Cc: "galaxy-dev@lists.bx.psu.edu" <galaxy-dev@lists.bx.psu.edu>
Sent: Tuesday, 11 December 2012, 15:05
Subject: Re: [SPAM] Re: [galaxy-dev] About the output
On 12/11/2012 03:49 PM, Chenhao Li wrote:
> Thx Hans-Rudolf
>
> But I did write </output> in the xml file
> Here is just a mistake
>
> In ~in ~/database/files/ folder there is just a folder named 000
> and there are lots of *.dat file in 000 folder
>
I assume, the latest *.dat file is the txt file you are interested?
Alternatively, click on the "!" button (next to the download buttan) and
you will see the full path
Regards, Hans-Rudolf
> ------------------------------------------------------------------------
> *From:* Hans-Rudolf Hotz <h...@fmi.ch>
> *To:* Chenhao <windfl...@yahoo.co.uk>
> *Cc:* galaxy-dev@lists.bx.psu.edu
> *Sent:* Tuesday, 11 December 2012, 8:36
> *Subject:* Re: [galaxy-dev] About the output
>
>
>
> On 12/10/2012 11:26 PM, Chenhao wrote:
> > I made a galaxy tool which is just create a txt file. When I use this
> > tool , I wish to let it show the detail of the txt.
> >
> > In the xml file I use :
> >
> > <output> <data name=”test” format=”txt”><output/>
>
> I assume, this should be written:
>
> <outputs> <data name=”test” format=”txt” /> </outputs>
>
>
> I am surprised, your tool doesn't create an error much earlier. How does
> the actual data file (in ~/database/files/ ) in look like?
>
>
> Regards, Hans-Rudolf
>
>
> >
> > But it does not work, when I click the “eye” button in galaxy, a
> > download dialog appear, but it is just a empty file.
> >
> > Could somebody tell me what should I do , I want show the txt detail in
> > the galaxy.
> >
> >
> >
> > ___________________________________________________________
> > Please keep all replies on the list by using "reply all"
> > in your mail client. To manage your subscriptions to this
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> >
> > http://lists.bx.psu.edu/
> >
>
>
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