We're using ldap authentication on our cluster, so our /etc/passwd files don't
have any user data and the credentials are returned by ldap. You will have to
adjust this to your situation. You can rsync /etc/passwd from elsewhere or
fiddle with PAM to work something out for your key-based setup. Sorry, I don't
have more insight into that part.
Regards,
Alex
On Dec 18, 2012, at 2:27 PM, cgan...@iu.edu wrote:
> Hi Alex,
>
> I see what you are saying, but I think our situations are slightly different.
> The line
> self.__user_system_pwent =
> pwd.getpwnam(job.user.email.split('@')[0] )
> *does* return the correct username, however, that user is not present in the
> Virtual machine that is running Galaxy, so when the job runner calls for
> pwd.getpwuid(), there is nothing there. By the way, the VM uses key
> authentication only, not passwords.
>
> The problem I think I'm having is that the /etc/passwd file I want to use is
> located on the cluster, not on the virtual machine. I'm not sure if I can
> just copy that file over. How else can I get ahold of the uid of the user
> who cannot log in to the machine Galaxy is running on?
>
> Thanks for the help,
>
> Carrie Ganote
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