Hi all,
Right now I have drmaa running with Torque. I have a virtual machine with
Galaxy installed on it, a filesystem mounted on the virtual machine that holds
the dataset info, and a cluster that runs big jobs and also has access to the
mounted filesystem. When running Galaxy as a real user, I get an error because
the real user has no pwd listing in the virtual machine. In this entry
<http://dev.list.galaxyproject.org/Different-User-with-Torque-td4655833.html#a4655837>
there is mention of galaxy_user.username; where is that and how is it
populated? I use kerberos to authenticate through apache.
Any clues appreciated!
Here's the dump:
galaxy.jobs ERROR 2012-12-18 11:29:01,871 (989) Failed to change ownership of
/Filesystem/job_working_directory/000/989, making world-writable instead
Traceback (most recent call last):
File "/Prefix/galaxy-dist/lib/galaxy/jobs/__init__.py", line 893, in
change_ownership_for_run
self._change_ownership( self.user_system_pwent[0], str(
self.user_system_pwent[3] ) )
TypeError: 'NoneType' object is unsubscriptable
galaxy.jobs.runners.drmaa ERROR 2012-12-18 11:29:01,928 Uncaught exception
queueing job
Traceback (most recent call last):
File "/Prefix/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 145, in
run_next
self.queue_job( obj )
File "/Prefix/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 237, in
queue_job
log.debug( '(%s) submitting with credentials: %s [uid: %s]' % (
galaxy_id_tag, job_wrapper.user_system_pwent[0],
job_wrapper.user_system_pwent[2] ) )
TypeError: 'NoneType' object is unsubscriptable
Carrie Ganote
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
