Hi all,

Right now I have drmaa running with Torque.  I have a virtual machine with 
Galaxy installed on it, a filesystem mounted on the virtual machine that holds 
the dataset info, and a cluster that runs big jobs and also has access to the 
mounted filesystem.  When running Galaxy as a real user, I get an error because 
the real user has no pwd listing in the virtual machine.  In this entry 
 there is mention of galaxy_user.username; where is that and how is it 
populated?  I use kerberos to authenticate through apache.

Any clues appreciated!

Here's the dump:
galaxy.jobs ERROR 2012-12-18 11:29:01,871 (989) Failed to change ownership of 
/Filesystem/job_working_directory/000/989, making world-writable instead
Traceback (most recent call last):
  File "/Prefix/galaxy-dist/lib/galaxy/jobs/__init__.py", line 893, in 
    self._change_ownership( self.user_system_pwent[0], str( 
self.user_system_pwent[3] ) )
TypeError: 'NoneType' object is unsubscriptable
galaxy.jobs.runners.drmaa ERROR 2012-12-18 11:29:01,928 Uncaught exception 
queueing job
Traceback (most recent call last):
  File "/Prefix/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 145, in 
    self.queue_job( obj )
  File "/Prefix/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py", line 237, in 
    log.debug( '(%s) submitting with credentials: %s [uid: %s]' % ( 
galaxy_id_tag, job_wrapper.user_system_pwent[0], 
job_wrapper.user_system_pwent[2] ) )
TypeError: 'NoneType' object is unsubscriptable

Carrie Ganote
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:


Reply via email to