To follow up...
My data file had a build key assigned to it:
Tool: BAM to BigWig | |
---|---|
Name: | BAM to BigWig on data 31 |
Created: | Jan 04, 2013 |
Filesize: | 39.9 MB |
Dbkey: | hg19-decoy |
Format: | bigwig |
Tool Version: | |
Tool Standard Output: | stdout |
Tool Standard Error: | stderr |
Tool Exit Code: | 0 |
Full Path: | /mnt/ngs/analysis/svcgalaxy/DATA/files/002/dataset_2166.dat |
and my build.txt file has that build listed:
#Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn
? unspecified (?)
hg19-decoy Human hg19 + Decoy (BROAD; [0-9XYMT]*) (hg19-decoy)
hg19-broad Human hg19 (BROAD; [0-9XYMT]*) (hg19-broad)
hg19 Human hg19 (UCSC; chr[0-9XYM]*) (hg19)
On Jan 03, 2013, at 04:48 PM, Anthonius deBoer <thondeb...@me.com> wrote:
Got this when trying CIRCSTER on latest galaxy-dist.Does this mean my system does not know about certain genomes?aTrackster works fine...ThonError Traceback:
⇝TypeError: argument of type 'NoneType' is not iterable
URL: http://srv151/visualization/circster?dataset_id=241d84796a24640a&hda_ldda=hdaModule weberror.evalexception.middleware:364 inrespond
view>> app_iter = self.application(environ, detect_start_response)
Module paste.wsgilib:539 inintercept_output
view>> app_iter = application(environ, replacement_start_response)
Module galaxy.web.framework.middleware.remoteuser:91 inTypeError: argument of type 'NoneType' is not iterable__call__
view>> return self.app( environ, start_response )
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/