Good catch; fixed in -central changeset 8d7d70348e52 Thanks, J.
On Jan 3, 2013, at 7:50 PM, Anthonius deBoer wrote: > To follow up... > My data file had a build key assigned to it: > > Tool: BAM to BigWig > Name: BAM to BigWig on data 31 > Created: Jan 04, 2013 > Filesize: 39.9 MB > Dbkey: hg19-decoy > Format: bigwig > Tool Version: > Tool Standard Output: stdout > Tool Standard Error: stderr > Tool Exit Code: 0 > Full Path: /mnt/ngs/analysis/svcgalaxy/DATA/files/002/dataset_2166.dat > > > > and my build.txt file has that build listed: > > #Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn > ? unspecified (?) > hg19-decoy Human hg19 + Decoy (BROAD; [0-9XYMT]*) (hg19-decoy) > hg19-broad Human hg19 (BROAD; [0-9XYMT]*) (hg19-broad) > hg19 Human hg19 (UCSC; chr[0-9XYM]*) (hg19) > > > > > On Jan 03, 2013, at 04:48 PM, Anthonius deBoer <[email protected]> wrote: > >> Got this when trying CIRCSTER on latest galaxy-dist. >> >> Does this mean my system does not know about certain genomes?a >> Trackster works fine... >> >> Thon >> >> Error Traceback: >> View as: Interactive | Text | XML (full) >> ⇝ TypeError: argument of type 'NoneType' is not iterable >> URL: >> http://srv151/visualization/circster?dataset_id=241d84796a24640a&hda_ldda=hda >> Module weberror.evalexception.middleware:364 in respond view >> >> app_iter = self.application(environ, detect_start_response) >> Module paste.debug.prints:98 in __call__ view >> >> environ, self.app) >> Module paste.wsgilib:539 in intercept_output view >> >> app_iter = application(environ, replacement_start_response) >> Module paste.recursive:80 in __call__ view >> >> return self.application(environ, start_response) >> Module galaxy.web.framework.middleware.remoteuser:91 in __call__ >> view >> >> return self.app( environ, start_response ) >> Module paste.httpexceptions:632 in __call__ view >> >> return self.application(environ, start_response) >> Module galaxy.web.framework.base:160 in __call__ view >> >> body = method( trans, **kwargs ) >> Module galaxy.webapps.galaxy.controllers.visualization:748 in circster >> view >> >> chroms_info = self.app.genomes.chroms( trans, dbkey=dbkey ) >> Module galaxy.visualization.genomes:210 in chroms view >> >> dbkey_owner, dbkey = decode_dbkey( dbkey ) >> Module galaxy.visualization.genomes:24 in decode_dbkey view >> >> if ':' in dbkey: >> TypeError: argument of type 'NoneType' is not iterable >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/
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