Good catch; fixed in -central changeset 8d7d70348e52

Thanks,
J.

On Jan 3, 2013, at 7:50 PM, Anthonius deBoer wrote:

> To follow up...
> My data file had a build key assigned to it:
> 
> Tool: BAM to BigWig
> Name: BAM to BigWig on data 31
> Created:      Jan 04, 2013
> Filesize:     39.9 MB
> Dbkey:        hg19-decoy
> Format:       bigwig
> Tool Version: 
> Tool Standard Output: stdout
> Tool Standard Error:  stderr
> Tool Exit Code:       0
> Full Path:    /mnt/ngs/analysis/svcgalaxy/DATA/files/002/dataset_2166.dat
> 
> 
> 
> and my build.txt file has that build listed:
> 
> #Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn
> ?       unspecified (?)
> hg19-decoy      Human hg19 + Decoy (BROAD; [0-9XYMT]*) (hg19-decoy)
> hg19-broad      Human hg19 (BROAD; [0-9XYMT]*) (hg19-broad)
> hg19    Human hg19 (UCSC; chr[0-9XYM]*) (hg19)
> 
> 
> 
> 
> On Jan 03, 2013, at 04:48 PM, Anthonius deBoer <thondeb...@me.com> wrote:
> 
>> Got this when trying CIRCSTER on latest galaxy-dist.
>> 
>> Does this mean my system does not know about certain genomes?a
>> Trackster works fine...
>> 
>> Thon
>> 
>> Error Traceback:
>> View as:   Interactive  |  Text  |  XML (full)
>> ⇝ TypeError: argument of type 'NoneType' is not iterable
>> URL: 
>> http://srv151/visualization/circster?dataset_id=241d84796a24640a&hda_ldda=hda
>> Module weberror.evalexception.middleware:364 in respond          view
>> >>  app_iter = self.application(environ, detect_start_response)
>> Module paste.debug.prints:98 in __call__          view
>> >>  environ, self.app)
>> Module paste.wsgilib:539 in intercept_output          view
>> >>  app_iter = application(environ, replacement_start_response)
>> Module paste.recursive:80 in __call__          view
>> >>  return self.application(environ, start_response)
>> Module galaxy.web.framework.middleware.remoteuser:91 in __call__          
>> view
>> >>  return self.app( environ, start_response )
>> Module paste.httpexceptions:632 in __call__          view
>> >>  return self.application(environ, start_response)
>> Module galaxy.web.framework.base:160 in __call__          view
>> >>  body = method( trans, **kwargs )
>> Module galaxy.webapps.galaxy.controllers.visualization:748 in circster       
>>    view
>> >>  chroms_info = self.app.genomes.chroms( trans, dbkey=dbkey )
>> Module galaxy.visualization.genomes:210 in chroms          view
>> >>  dbkey_owner, dbkey = decode_dbkey( dbkey )
>> Module galaxy.visualization.genomes:24 in decode_dbkey          view
>> >>  if ':' in dbkey:
>> TypeError: argument of type 'NoneType' is not iterable
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