Hi Michael, Your paster log still is showing the older code. Any idea how this happens in your environment?
On Jan 29, 2013, at 9:46 AM, Waldron, Michael H wrote: > > I had stopped the Galaxy server before running the update, then started it > afterward. > > > Mike Waldron > Systems Specialist > ITS - Research Computing Center > University of North Carolina at Chapel Hill > > From: Greg Von Kuster [g...@bx.psu.edu] > Sent: Tuesday, January 29, 2013 9:12 AM > To: Waldron, Michael H > Cc: galaxy-...@bx.psu.edu > Subject: Re: [galaxy-dev] Error trying to add tools from tool shed respository > > Hi Michael, > > Did you restart your Galaxy server after updating from Galaxy central? Your > paster log shows the following: > >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', >>> line 1201 in prepare_for_install > description, repository_clone_url, changeset_revision, ctx_rev, > repository_owner, tool_dependencies = repo_info_tuple > > However, that line no longer exists in the revision to which you've updated, > and line 1201 of the admin_toolshed.py file is now: > > status = kwd.get( 'status', 'done' ) > > Greg Von Kuster > > > On Jan 29, 2013, at 9:03 AM, Waldron, Michael H wrote: > >> Here is the output from hg heads. >> >> [galaxy@galaxy galaxy-dist]$ hg heads >> changeset: 8677:22788c1262a2 >> tag: tip >> user: jeremy goecks <jeremy.goe...@emory.edu> >> date: Mon Jan 28 16:36:02 2013 -0500 >> summary: Language improvements for tophat wrappers. >> >> changeset: 7987:966a9b393b85 >> branch: add_requirement_tags_for_plink >> parent: 7472:06b31a61793c >> user: Dannon Baker <dannonba...@me.com> >> date: Mon Aug 13 13:23:54 2012 -0400 >> summary: Branch close >> >> changeset: 7152:ffc20445b35e >> branch: split_blast2 >> parent: 7058:22f545c0d412 >> user: Dannon Baker <dannonba...@me.com> >> date: Wed Apr 18 07:59:38 2012 -0400 >> summary: Branch close. >> >> changeset: 7151:c94957ac5454 >> branch: workflow_import_menu_api >> parent: 6834:1a3d01b09f7a >> user: Dannon Baker <dannonba...@me.com> >> date: Wed Mar 21 09:50:44 2012 -0400 >> summary: Branch close for pull request. >> >> changeset: 7150:314a10ae112d >> branch: split_blast >> parent: 6757:ebf65c0b1e26 >> user: Dannon Baker <dannonba...@me.com> >> date: Tue Feb 28 12:32:54 2012 -0500 >> summary: Close split_blast branch >> >> changeset: 7149:1327f2219423 >> branch: meme_requirement_on_fimo >> parent: 6662:8ba74c17e809 >> user: Daniel Blankenberg <d...@bx.psu.edu> >> date: Fri Feb 03 11:15:29 2012 -0500 >> summary: close branch >> >> >> Mike Waldron >> Systems Specialist >> ITS - Research Computing Center >> University of North Carolina at Chapel Hill >> >> From: Greg Von Kuster [g...@bx.psu.edu] >> Sent: Tuesday, January 29, 2013 9:00 AM >> To: Waldron, Michael H >> Cc: galaxy-...@bx.psu.edu >> Subject: Re: [galaxy-dev] Error trying to add tools from tool shed >> respository >> >> Hi Michael, >> >> The previous post you mention is outdated. The main Galaxy tool shed from >> which you are pulling has been tracking Galaxy dist for some time now, so >> you should only have to update to that. >> >> However, the communication layer between Galaxy and the tool shed is >> backward compatible to the December 20, 2012 Galaxy release, so whether you >> have updated from Galaxy central or Galaxy dist, you should not be seeing >> the behavior you describe. >> >> If you do, in fact, track Galaxy central though, and use the main Galaxy >> tool shed, you may experience some strange behavior because the the >> development code may include new features that are not available on the main >> tool shed since it tracks Galaxy dist. >> >> What is the result of typing the following in your Galaxy installation >> directory? >> >> hg heads >> >> Thanks, >> >> Greg Von Kuster >> >> >> On Jan 29, 2013, at 8:38 AM, Waldron, Michael H wrote: >> >>> Users are getting the following error when trying to add a tool from the >>> tool shed repository on our local galaxy instance. >>> >>> "An error occurred. See the error logs for more information. (Turn debug on >>> to display exception reports here)" >>> >>> The galaxy server log shows the message included below. The main error is >>> "ValueError: too many values to unpack ". From a similar previous post, the >>> resolution was to use the latest code from Galaxy central. I just ran an >>> "hg pull -u" pointing to galaxy-central (we had been pointing to >>> galaxy-dist), but we still get the same error. >>> >>> Any ideas? >>> >>> (server log) >>> [29/Jan/2013:08:19:05 -0400] "GET >>> /admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=f19bc86bac946438&changeset_revisions=2d6671b10919 >>> HTTP/1.1" 500 - >>> "http://toolshed.g2.bx.psu.edu/repository/preview_tools_in_changeset?repository_id=f19bc86bac946438&changeset_revision=2d6671b10919"; >>> "Mozilla/5.0 (Macintosh; Intel Mac OS X 10_6_8) AppleWebKit/534.57.2 >>> (KHTML, like Gecko) Version/5.1.7 Safari/534.57.2" >>> Error - <type 'exceptions.ValueError'>: too many values to unpack >>> URL: >>> https://galaxy.its.unc.edu/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=f19bc86bac946438&changeset_revisions=2d6671b10919 >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', >>> line 143 in __call__ >>> app_iter = self.application(environ, start_response) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', >>> line 80 in __call__ >>> return self.application(environ, start_response) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/middleware/remoteuser.py', >>> line 91 in __call__ >>> return self.app( environ, start_response ) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', >>> line 632 in __call__ >>> return self.application(environ, start_response) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/base.py', >>> line 160 in __call__ >>> body = method( trans, **kwargs ) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/web/framework/__init__.py', >>> line 206 in decorator >>> return func( self, trans, *args, **kwargs ) >>> File >>> '/nas02/apps/galaxy-prod/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', >>> line 1201 in prepare_for_install >>> description, repository_clone_url, changeset_revision, ctx_rev, >>> repository_owner, tool_dependencies = repo_info_tuple >>> ValueError: too many values to unpack >>> >>> >>> Mike Waldron >>> Systems Specialist >>> ITS - Research Computing Center >>> University of North Carolina at Chapel Hill >>> >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ >> >> > >
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