Hi, shenwiyn
I'd also add:
Fourth, replace distributed default sqlite with postgresql
to your list if it's for any serious use. Sqlite is ok for testing.


On Wed, Feb 27, 2013 at 9:37 PM, shenwiyn <shenw...@gmail.com> wrote:

> **
> **Hello Carl,
> Thank you very much for your help.I have some thoughts about installing my
> local galaxy :
>
> First,download the latest source of galaxy from
> https://bitbucket.org/galaxy/galaxy-dist/ ,then install it in my local
> computer.
> Second,install dependencies tools mentioned in
> http://wiki.galaxyproject.org/Admin/Data%20Integration successfully.
> Third ,install the needed data and configure the .loc files from the
> following help of wiki page
> http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup.
> Finally ,our installation of local galaxy overs and it works in the
> mass.Is it right ?
>
> And I also have some confusions:
> First ,How large the total needed data is ?Is all the data in
> datacache.g2.bx.psu.edu/indexes needed ?
> Second, can all of these needed data be downloaded (via rsync) by the help
> of http://wiki.galaxyproject.org/Admin/Data%20Integration?
> These are the most important questions I concerned about now.I am so
> thankful for some of you advice.
>
>
> Thank you very much.
>
>
>
>  ------------------------------
>  shenwiyn
>
>  *From:* Carl Eberhard <carlfeberh...@gmail.com>
> *Date:* 2013-02-23 02:42
> *To:* shenwiyn <shenw...@foxmail.com>
> *CC:* galaxy-dev@lists.bx.psu.edu
> *Subject:* Re: [galaxy-dev] all the data files in .loc files needed to
> download ?
>  Hello shenwiyn,
>
> You may want to have a look at
> http://wiki.galaxyproject.org/Admin/Data%20Integration which provides
> more information specific to the indeces/data you'll need and how to
> install.
>
> Along with data management, that page has instructions on how to download
> (via rsync) the same data we use on our main server. It may be a good
> starting point.
>
> Thanks,
> Carl
>
>
>
> On Thu, Feb 21, 2013 at 8:58 PM, shenwiyn <shenw...@foxmail.com> wrote:
>
>> **
>> Hi Carl Eberhard,
>> Thank you very much for you help.I have another some questions :
>> First,
>> we need to install the needed data,for example sam_fa_indices.loc file
>> of SAM Tools :
>> index   AaegL1  /afs/bx.psu.edu/depot/data/genome/AaegL1/sam_index/AaegL1
>> .fa
>> index   AgamP3  /afs/bx.psu.edu/depot/data/genome/AgamP3/sam_index/AgamP3
>> .fa
>> index   ailMel1 /afs/bx.psu.edu/depot/data/genome/ailMel1/sam_index/
>> ailMel1.fa
>> index   anoCar2 /afs/bx.psu.edu/depot/data/genome/anoCar2/sam_index/
>> anoCar2.fa
>> index   apiMel2 /afs/bx.psu.edu/depot/data/genome/apiMel2/sam_index/
>> apiMel2.fa
>> index   apiMel3 /afs/bx.psu.edu/depot/data/genome/apiMel3/sam_index/
>> apiMel3.fa
>> index   aplCal1 /afs/bx.psu.edu/depot/data/genome/aplCal1/sam_index/
>> aplCal1.fa
>> ....
>> so we need to download AaegL1.fa,AgamP3.fa,ailMel1.fa,anoCar2.fa,apiMel2.
>> fa,apiMel3.fa,and so on ,then install all of this needed datas to /afs/bx
>> .psu.edu/depot/data/genome/aplCal1/sam_index/,is it right?
>> Second,
>> from the needed datas mentioned in the .loc files in
>> http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup ,we need to
>> download too much data,can we get all these data from some website instead
>> of searching them on Iternet one by one?
>>
>>
>> Thanks,
>> shenwiyn
>>
>>
>>
>> ------------------------------
>>
>>  *From:* Carl Eberhard <carlfeberh...@gmail.com>
>> *Date:* 2013-02-22 01:20
>> *To:* shenwiyn <shenw...@gmail.com>
>> *Subject:* Re: [galaxy-dev] all the data files in .loc files needed to
>> download ?
>>   Hello,
>> Yes a local galaxy requires a few steps in order to install the needed
>> data.
>>
>> The following wiki page should help get you started:
>> http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup
>>
>> Let me know if you need more information,
>> Carl
>>
>>
>>
>> On Tue, Feb 19, 2013 at 3:59 AM, shenwiyn <shenw...@gmail.com> wrote:
>>
>>> **
>>> Hi all,
>>> Are all the data files in .loc files needed to download and put to the 
>>> right directory when
>>> we install our local galaxy?
>>>
>>> thaks
>>> shenwiyn
>>>
>>> ------------------------------
>>>
>>>
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