Greg, I don't think there is currently any support for variable
substitution of this sort in job runner configuration, but it could
definitely be added. Worth filing as an issue.


--
James Taylor, Assistant Professor, Biology/CS, Emory University


On Wed, Mar 13, 2013 at 8:12 AM, greg <margeem...@gmail.com> wrote:

> Hi guys,
>
> I just wanted to check in and see if anyone had any ideas on this.
> (It's actually the -A flag I'm after.)
>
> I did try putting this in universe.wsgi:
>
> default_cluster_job_runner = drmaa://-V -pe batch 8 -A Account_Name/
>
> I was thinking galaxy might substitute the user name for
> "Account_Name" but no luck :-(
>
> -Greg
>
> On Tue, Mar 12, 2013 at 1:42 PM, greg <margeem...@gmail.com> wrote:
> > In our local galaxy install we want the cluster jobs to be run from
> > the galaxy user but we want to include a -a [account name] to our grid
> > software bills properly.
> >
> > Here's what I currently have in universe.wsgi:
> >
> > default_cluster_job_runner = drmaa://-V -pe batch 8/
> >
> > What I want is something like this:
> >
> > default_cluster_job_runner = drmaa://-V -pe batch 8 -a [logged in user
> name]/
> >
> > Is this possible?
> >
> > Thanks,
> >
> > Greg
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