On Sun, Mar 17, 2013 at 3:40 PM, Björn Grüning
<bjoern.gruen...@pharmazie.uni-freiburg.de> wrote:
> Am Sonntag, den 17.03.2013, 15:26 +0000 schrieb Peter Cock:
>> On Sun, Mar 17, 2013 at 3:13 PM, Björn Grüning wrote:
>> > Hi all,
>> >
>> > can anyone confirm that the parallelism features is not working in
>> > galaxy-central? Parallelism is among others used by the blast+ wrappers.
>> >
>> > The only error message I get is:
>> >
>> > galaxy.jobs DEBUG 2013-03-17 16:08:27,729 (64174) Working directory for
>> > job
>> > is: /media/data/web/galaxy-central/database/job_working_directory/064/64174
>> > galaxy.jobs.handler DEBUG 2013-03-17 16:08:27,750 (64174) Dispatching to
>> > tasks runner
>> > galaxy.jobs.handler ERROR 2013-03-17 16:08:27,750 put(): (64174) Invalid
>> > job runner: tasks
>> > galaxy.datatypes.metadata DEBUG 2013-03-17 16:08:28,079 Cleaning up
>> > external metadata files
>> > galaxy.jobs.handler INFO 2013-03-17 16:08:28,120 (64174) Job dispatched
>> >
>> > It's working fine for me with galaxy-dist.
>> > Thanks!
>> > Bjoern
>>
>> Which hg revision are you on from galaxy-central? It was
>> working for me last time I tested, but my setup isn't fully
>> up-to-date with the development repository.
>
> I'm on 9088:1aa6224b32c2. Which hg revision are you using? Maybe I can
> track down the commit. handler.py changed a lot recently :(

So yours is very up to date, just 20 hours ago according to bitbucket:
https://bitbucket.org/galaxy/galaxy-central/commits/1aa6224b32c2

For the default branch (which I merge into my working branch),
I last updated 24 days ago - over three weeks:
https://bitbucket.org/galaxy/galaxy-central/commits/45f1d93124ad

$ hg id
45f1d93124ad

$ hg log -l 1 -b default
changeset:   9548:45f1d93124ad
parent:      9546:1adf6fdd9c49
user:        InitHello <inithe...@gmail.com>
date:        Thu Feb 21 11:06:11 2013 -0500
summary:     Changed to_safe_string to use markupsafe.escape for
unsafe characters.

Assuming I'm right and parallelism was working fine with that
commit, we've only narrowed this down to the last 24 days.
If I update mine and it breaks, I'll let you know.

Peter

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