On Sun, Mar 17, 2013 at 3:40 PM, Björn Grüning <[email protected]> wrote: > Am Sonntag, den 17.03.2013, 15:26 +0000 schrieb Peter Cock: >> On Sun, Mar 17, 2013 at 3:13 PM, Björn Grüning wrote: >> > Hi all, >> > >> > can anyone confirm that the parallelism features is not working in >> > galaxy-central? Parallelism is among others used by the blast+ wrappers. >> > >> > The only error message I get is: >> > >> > galaxy.jobs DEBUG 2013-03-17 16:08:27,729 (64174) Working directory for >> > job >> > is: /media/data/web/galaxy-central/database/job_working_directory/064/64174 >> > galaxy.jobs.handler DEBUG 2013-03-17 16:08:27,750 (64174) Dispatching to >> > tasks runner >> > galaxy.jobs.handler ERROR 2013-03-17 16:08:27,750 put(): (64174) Invalid >> > job runner: tasks >> > galaxy.datatypes.metadata DEBUG 2013-03-17 16:08:28,079 Cleaning up >> > external metadata files >> > galaxy.jobs.handler INFO 2013-03-17 16:08:28,120 (64174) Job dispatched >> > >> > It's working fine for me with galaxy-dist. >> > Thanks! >> > Bjoern >> >> Which hg revision are you on from galaxy-central? It was >> working for me last time I tested, but my setup isn't fully >> up-to-date with the development repository. > > I'm on 9088:1aa6224b32c2. Which hg revision are you using? Maybe I can > track down the commit. handler.py changed a lot recently :(
So yours is very up to date, just 20 hours ago according to bitbucket: https://bitbucket.org/galaxy/galaxy-central/commits/1aa6224b32c2 For the default branch (which I merge into my working branch), I last updated 24 days ago - over three weeks: https://bitbucket.org/galaxy/galaxy-central/commits/45f1d93124ad $ hg id 45f1d93124ad $ hg log -l 1 -b default changeset: 9548:45f1d93124ad parent: 9546:1adf6fdd9c49 user: InitHello <[email protected]> date: Thu Feb 21 11:06:11 2013 -0500 summary: Changed to_safe_string to use markupsafe.escape for unsafe characters. Assuming I'm right and parallelism was working fine with that commit, we've only narrowed this down to the last 24 days. If I update mine and it breaks, I'll let you know. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
