I have the following job_conf.xml file setup for our cluster:

When running jobs from my admin account via Galaxy it runs under the same
user as galaxy is, for testing, this as root. I need for it to run under
the real user.

The email address / galaxy account I am using to test with does match with
a user on the cluster -- u...@example.com where user is a valid user
account with correct permissions to run jobs on our cluster and queue.

I followed the information here:

Any ideas as to why galaxy_external* is not being called? The paster.log
file does not show anything useful regarding calling external scripts.

Adam Brenner
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences

Research Computing Support
Office of Information Technology

University of California, Irvine
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