Anyone have any ideas as to why its not running? Surely must be a few users
who run Galaxy via a Scheduler using DRMAA...
My updated job_conf.xml is like so: http://pastebin.com/raw.php?i=QJbay57i
Jobs do get submitted to DRMAA, but the scripts are never called to run as
real user. I have DEBUG set to true in universe_wsgi.ini and nothing
regarding errors or debug message are created in paster.log about this.
Computer Science, Undergraduate Student
Donald Bren School of Information and Computer Sciences
Research Computing Support
Office of Information Technology
University of California, Irvine
On Tue, Apr 16, 2013 at 4:55 PM, Adam Brenner <aebre...@uci.edu> wrote:
> I have the following job_conf.xml file setup for our cluster:
> When running jobs from my admin account via Galaxy it runs under the same
> user as galaxy is, for testing, this as root. I need for it to run under
> the real user.
> The email address / galaxy account I am using to test with does match with
> a user on the cluster -- u...@example.com where user is a valid user
> account with correct permissions to run jobs on our cluster and queue.
> I followed the information here:
> Any ideas as to why galaxy_external* is not being called? The paster.log
> file does not show anything useful regarding calling external scripts.
> Adam Brenner
> Computer Science, Undergraduate Student
> Donald Bren School of Information and Computer Sciences
> Research Computing Support
> Office of Information Technology
> University of California, Irvine
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