I'm unable to duplicate that error, what revision of Galaxy and the tool shed code are you running?

The path mentioned in the error message is a temporary working directory that is created for downloading and processing files needed for a tool dependency. Had the installation succeeded, the required files would have been moved to a path under /mnt/testgalaxydb/database, as expected.

   --Dave B.

On 5/29/13 06:54:39.000, Joachim Jacob | VIB | wrote:
Hi all,

I am building a wrapper around BLAT, and have put it locally in a
toolshed. However, the automatic installation of dependencies fails:

Tool dependency installation error:
[Errno 2] No such file or directory:


Note that there is a strange duplication in the path. Furthermore, on
that Galaxy instance, the database is on /mnt/testgalaxydb/database
instead of path mentioned in the error.

The tool_dependencies.xml matches the wrapper xml. blat is just
downloaded from its url.

<?xml version="1.0"?>
     <package name="blat" version="1.0.0">
         <install version="1.0">

                 <action type="move_file">
                 <action type="set_environment">
                     <environment_variable name="PATH"
The BLAT binary for linux x86_64 is retrieved from UCSC.

Thanks for helping me further.


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