Hi Peter, is it also crashing for you locally? I was also able to install the wrapper successfully. I'm just wondering if the testtoolshed is not updated or if I have some nice local modifications left, that are worth a pull request :)
Cheers, Bjoern > On Thu, May 30, 2013 at 10:30 AM, Joachim Jacob | VIB | > <joachim.ja...@vib.be> wrote: > > Unfortunately, updating to the latest code (9320:47ddf167c9f1) does not > > solve the problem. > > > > I may be seeing the same issue on the Test Tool Shed, which > suggests a recent regression: > > This is for the NCBI BLAST+ tools, attempting to compile from source: > > Installation errors - no functional tests were run for any tools in > this changeset revision > Type Name Version > blast+ package 2.2.26+ > Error > [Errno 2] No such file or directory: > '/var/opt/buildslaves/buildslave-ec2-1/buildbot-install-test-test-tool-shed-py27/build/test/install_and_test_tool_shed_repositories/tmp/tmpOASYB_/tmpkEDmTH/ncbi-blast-2.2.26+-src.tar.gz' > > http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/c1a6e5aefee0 > > <?xml version="1.0"?> > <tool_dependency> > <package name="blast+" version="2.2.26+"> > <install version="1.0"> > <actions> > <action > type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> > <action type="shell_command">cd c++ && > ./configure --prefix=$INSTALL_DIR && make && make > install</action> > <action type="set_environment"> > <environment_variable name="PATH" > action="prepend_to">$INSTALL_DIR/bin</environment_variable> > </action> > </actions> > </install> > <readme> > Downloads and compiles BLAST+ from the NCBI, which assumes you have > all the required build dependencies installed. See: > http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download > </readme> > </package> > </tool_dependency> > > This was based on an older working tool_dependencies.xml file, > and other than the comments should match that currently on the > main tool shed, where it was working: > http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/9dabbfd73c8a > > <?xml version="1.0"?> > <tool_dependency> > <package name="blast+" version="2.2.26+"> > <install version="1.0"> > <actions> > <action > type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> > <action type="shell_command">cd c++ && > ./configure --prefix=$INSTALL_DIR && make && make > install</action> > <action type="set_environment"> > <environment_variable name="PATH" > action="prepend_to">$INSTALL_DIR/bin</environment_variable> > </action> > </actions> > </install> > <readme> > These links provide information for building the NCBI Blast+ package > in most environments. > > System requirements > http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download > </readme> > </package> > </tool_dependency> > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
