As part of a warmup, I added a tool for perming eQTL analysis using PANAMA(

By default PANAMA writes to stderr and creates a PANAM_results.csv file in
the same directory as the input files.

I wrote a python  wrapper

for this.

I however also came across how stderr text can be handled in Galaxy :

and thus wrote a new XML :

Apparently the above XML runs too, but I dont get back a CSV. Essentially I
need to move the PANAMA_results.csv file to output1. Can this be done
without using a  wrapper at all , just using the XML files ?

Is there a way to nest the commands in the XML so that I could do a
<move command> after <panama command> , but how would the paths be
specified ?

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