Along with the Tophat (could not determine version: 
 problem in my cloudman, I experience a similar problem with Cufflinks.
I uploaded a trial BAM file and ran cufflinks 0.0.6. The run failed and I got a 
message that "Could not determine the version of Cufflinks".
When I tried to report the bug using the green bug icon, I get a message "Mail 
is not configured to report this bug".
I updated my Galaxy to http://bit.ly/galaxy20130812 and restarted my instance.
My instance is on, but I am unable to analyse my data.
Where do I go wrong?
Kindly help me to solve this problem.
Thank you.

Best wishes,

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