I have migrated Emboss tool from dist to tool-shed using the migration script
and later updated it's revision. The tool was installed along with it's
dependencies, but it's failing to find them during job run. It's logging
following 'Failed to resolve dependency on 'emboss', ignoring' warning message
in the log file. It seems like build_dependency_shell_commands method in
'/lib/galaxy/tools/__init__.py' is unable to get installed_tool_dependencies. I
am not sure why this would fail and how to resolve it. I have tried resetting
tool metadata several times, but that didn't help. Appreciate any help on
resolving this error. I am using Galaxy release_2013.06.03 revision.
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: