Hi Nikos, > Hi all > > > I installed bismark from the toolshed (bgruening) with all > dependencies having been installed successfully and I generated the > genomes according to the instructions. > > > While trying to test the tool I got the following error. > > > galaxy.jobs.handler ERROR 2013-09-04 13:14:26,267 Failed to generate > job destination > Traceback (most recent call last): > File > "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/handler.py", > line 287, in __check_if_ready_to_run > self.job_wrappers[job.id].job_destination > File > "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", > line 617, in job_destination > return self.job_runner_mapper.get_job_destination(self.params) > File > "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/mapper.py", line > 163, in get_job_destination > self.__cache_job_destination( params ) > File > "/steno-internal/projects/galaxy/galaxy-dist/lib/galaxy/jobs/mapper.py", line > 148, in __cache_job_destination > raw_job_destination = > self.job_wrapper.tool.get_job_destination( params ) > AttributeError: 'NoneType' object has no attribute > 'get_job_destination' > galaxy.datatypes.metadata DEBUG 2013-09-04 13:14:26,905 Cleaning up > external metadata files > galaxy.jobs.handler ERROR 2013-09-04 13:14:27,034 (1316) Error > checking job readiness
that does not look like a bismark error. Is it happen with other tools as well? > I'm using the old style job configuration (the one in > universe_wsgi.ini). Could that be the issue? Not sure, sorry. But you should migrate to the new job configuration, better sooner than later. Cheers, Bjoern > > Bests, > Nikos > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
