Hello Rui, We have DESeq2 wrapper in our oqtans package and you will find this at https://github.com/ratschlab/oqtans_tools/tree/master/DESeq2
I am currently creating the associated tool_dependency.xml file for dumping the package in galaxy toolshed. otherwise it requires some manual effort to install via toolshed. May be it will help you, Vipin Hi All, > > we are making a wrapper for deseq2, and there is a step where > control/experimental conditions > need to be determined. For example, it would be a column like the > following in the input file > > Type > CTC > CTC > LM > LM > PT > PT > > and we want the select list to contain > > CTC > LM > PT > > In other words, we want to filter out the 'Type' and have only distinct > ones in the select list. We could > make it in two steps, generate a intermediate file for this but it would > be nice that we could directly > retrieve the distinct types to make the list. I took a look at the tool > config wiki, but didn't see anything > (maybe because it was a quick scan). Does anyone have any tip on this? > we'll really appreciate. > > Thanks, > Rui > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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