It appears that the Tool Shed does not show the correct "readme" file content.

1) get_readme_files() in lib/galaxy/webapps/tool_shed/controllers/ repository.py gets the correct metadata from the database 2) build_readme_files_dict() in lib/tool_shed/util/readme_util.py reads data from whatever revision happens to be there (not the requested revision)


As an example, compare the output from:
http://toolshed.g2.bx.psu.edu/repository/get_readme_files? name=genome_diversity&owner=miller-lab&changeset_revision=5064f618ec1c
and:
http://toolshed.g2.bx.psu.edu/repos/miller-lab/genome_diversity/file/ 5064f618ec1c/README

-rico

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