Hi Ian,

what mean broken pipe error, can you post the error message here?

Thanks,
Bjoern

> Hello,
> 
> I've got a local install of galaxy with fastx tools installed. I'm getting a 
> broken pipe error but I'm not sure why. I install fastx using the compiler 
> outside galaxy and it was working fine inside galaxy previously. Fastx works 
> fine via the command line. I've checked the xml files and I don't see how 
> galaxy cannot find the commands. I am running this off and external volume, 
> but I don't think that matters.
> 
> Cheers
> Ian
> 
> 
> 
> 
> 
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