Am Samstag, den 12.10.2013, 19:42 +0100 schrieb Peter Cock: > On Thu, Aug 1, 2013 at 10:27 AM, Nicola Soranzo <sora...@crs4.it> wrote: > > Il 2013-07-30 17:18 Peter Cock ha scritto: > >> > >> Hello all, > >> > >> Re: > >> http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html > >> http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011557.html > >> > >> Something I raised during the GCC2013, and we talked about > >> via Twitter as well was a Galaxy environment variable for use > >> within Tool Wrappers setting the number of threads/CPUs to > >> use. > >> > >> The idea is that you can configure a default value, and then > >> override this per runner or per tool etc. > > > > > > Thanks Peter for pushing this idea, I totally support this proposal. > > In the mean time, I've been using for my tools the solution by > > Jim Johnson for its CD-HIT wrapper: > > > > http://toolshed.g2.bx.psu.edu/view/jjohnson/cdhit > > > > But this requires the system administrator to modify both the tool > > env.sh and job_conf.xml to be in sync. > > > >> Is there an open Trello card for this? > > > > A Trello card would be useful indeed. > > > > Nicola > > Better than a Trello card, we now have a pull request from John: > https://bitbucket.org/galaxy/galaxy-central/pull-request/236/job-runner-enhancements-galaxy_slots/diff
And thanks to John its merged! Time for testing and migrating our tools :) > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
