Hey Greg, Sorry about the delay on this over the holidays. I see what you're working with now. If you install your customizations in a portable manner in /mnt/galaxyData that should be safe and we'll make sure to provide a smooth migration path going forward should that change. Only 'galaxy' type clusters will have /mnt/galaxy and data only clusters should continue to work just fine with /mnt/galaxyData.
-Dannon On Mon, Dec 30, 2013 at 1:33 PM, greg <[email protected]> wrote: > Just following up on this. So it's ok to do all of my customizations > in /mnt/galaxyData? > > Or am I doing something wrong, and I need to figure out how to boot up > into a version that has /mnt/galaxy? > > Thanks again, > > Greg > > On Fri, Dec 20, 2013 at 2:49 PM, greg <[email protected]> wrote: > > Yes, I just launched it a few hours ago. > > > > I just went here and filled out the form: > > https://usegalaxy.org/cloudlaunch > > > > I chose "data cluster" when prompted and enter 5GB. > > > > > > On Fri, Dec 20, 2013 at 2:48 PM, Dannon Baker <[email protected]> > wrote: > >> And is this a new instance you've just launched? If so, how'd you > launch > >> it? > >> > >> > >> On Fri, Dec 20, 2013 at 2:37 PM, greg <[email protected]> wrote: > >>> > >>> Here's what I'm seeing: > >>> > >>> ubuntu@ip-10-182-195-79:/$ ls / > >>> bin boot dev etc export home initrd.img lib lib64 lost+found > >>> media mnt opt proc root run sbin selinux srv sys tmp usr > >>> var vmlinuz > >>> ubuntu@ip-10-182-195-79:/$ ls mnt > >>> cm galaxyData lost+found transient_nfs > >>> ubuntu@ip-10-182-195-79:/$ ls /mnt/galaxyData/ > >>> export files tmp upload_store > >>> > >>> > >>> > >>> On Fri, Dec 20, 2013 at 2:20 PM, Dannon Baker <[email protected]> > >>> wrote: > >>> > Does /mnt/galaxy exist, and does it have all of the expected galaxy > >>> > components? /mnt/galaxyData might exist, but it should be either > empty > >>> > or a > >>> > symlink to /mnt/galaxy if I remember correctly. > >>> > > >>> > If you're launching your cluster from usegalaxy.org/cloudlaunch, you > >>> > should > >>> > always be using the latest stuff. > >>> > > >>> > > >>> > On Fri, Dec 20, 2013 at 2:13 PM, greg <[email protected]> wrote: > >>> >> > >>> >> Thanks. I was wrong before. I actually do see a /mnt/galaxyData. > >>> >> > >>> >> Should I not being seeing that? Am I not on cloudman 2.0? > >>> >> > >>> >> -Greg > >>> >> > >>> >> On Fri, Dec 20, 2013 at 1:57 PM, Dannon Baker < > [email protected]> > >>> >> wrote: > >>> >> > With the Cloudman 2.0 release, the galaxyData and galaxyTools > volumes > >>> >> > have > >>> >> > been merged to a single 'galaxy' volume. /mnt/galaxy is now your > >>> >> > single > >>> >> > persistent (by default, at least) volume, so, if you install your > >>> >> > tool > >>> >> > to > >>> >> > here and share everything should work as expected. > >>> >> > > >>> >> > -Dannon > >>> >> > > >>> >> > > >>> >> > On Fri, Dec 20, 2013 at 1:53 PM, greg <[email protected]> > wrote: > >>> >> >> > >>> >> >> Hi guys, > >>> >> >> > >>> >> >> I just launched an instance from > https://usegalaxy.org/cloudlaunch > >>> >> >> and > >>> >> >> chose "data cluster" when prompted. > >>> >> >> > >>> >> >> Everything seems to have gone ok, but when I ssh in, I don't see > >>> >> >> /mnt/galaxyData > >>> >> >> > >>> >> >> > >>> >> >> Background: > >>> >> >> > >>> >> >> Basically we have a bioinformatics tool that needs SGE to run. > So I > >>> >> >> want to install it on a galaxy cloud instance and then provide > the > >>> >> >> share string to other researchers. > >>> >> >> > >>> >> >> I did this successfully a year or two ago by installing it to > >>> >> >> /mnt/galaxyData. > >>> >> >> > >>> >> >> Thanks, > >>> >> >> > >>> >> >> Greg > >>> >> >> ___________________________________________________________ > >>> >> >> Please keep all replies on the list by using "reply all" > >>> >> >> in your mail client. To manage your subscriptions to this > >>> >> >> and other Galaxy lists, please use the interface at: > >>> >> >> http://lists.bx.psu.edu/ > >>> >> >> > >>> >> >> To search Galaxy mailing lists use the unified search at: > >>> >> >> http://galaxyproject.org/search/mailinglists/ > >>> >> > > >>> >> > > >>> > > >>> > > >> > >> >
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