On Fri, Jan 17, 2014 at 8:34 AM, Bossers, Alex <alex.boss...@wur.nl> wrote: > Peter, > We will definitely give them a try.
Great. > > I never understood why the tabular outputs did have an option to include > the defline/hit decryption. That was a long standing gripe of mine too, fixed in BLAST+ 2.2.28 and available in the BLAST+ wrappers on the main Tool Shed since Dec 2013, http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus/ - see also: http://blastedbio.blogspot.co.uk/2012/05/blast-tabular-missing-descriptions.html > Just for that we needed to use the cloggy XML output and parse that into > a table again. Yes, that was a pain. It was the main reason for writing this tool: http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr > Conserved header names are more useful to us than having column > numbers. But either is fine with us. > Alex Yes, I'd also like the standard BLAST+ tabular output to include a # (hash) commented header line listing the fields (tab separated). They do something like this in the extremely verbose commend tabular output, but that adds a lot of other largely redundant comment lines as well :( Regards, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
